Calendar the letter deadline first
The protest period is generally 30 days, but the exact IRS letter controls. A later Notice of Deficiency has a separate court deadline that discussions with the IRS do not extend.
1. Identify the case and notice
- Audit or examination letter number recorded.
- Examination report and all schedules collected.
- Tax form and every tax period confirmed.
- Proposed tax and penalties recorded by period.
- Agreement form left unsigned while the changes remain disputed.
2. Protect every deadline
- Appeal-rights deadline copied exactly from the letter.
- Mailing, upload, or fax instructions verified.
- Weekend, holiday, and receipt rules checked in the notice.
- Any Notice of Deficiency deadline calendared separately.
- Proof of timely submission planned before the final day.
3. Complete the examination record
- Every requested record already provided to the examiner when possible.
- Conference with the examiner or supervisor considered.
- Each disputed issue matched to the report line and adjustment amount.
- Facts, records, and legal support organized by issue.
- New evidence identified so it can be reviewed by the originating office before transfer.
4. Choose the request type
- Small Case Request eligibility checked for each tax period.
- Total proposed tax and penalties confirmed as $25,000 or less per period when using the small-case route.
- Employee-plan, exempt-organization, partnership, and S corporation exclusions checked.
- Current Form 12203 downloaded from IRS.gov when appropriate.
- Formal written protest prepared when any period exceeds $25,000 or the case type requires it.
5. Draft the protest
- Clear statement requesting review by the Independent Office of Appeals.
- Name, address, daytime phone, tax periods, and proposed changes included.
- Each disputed issue listed separately with the reason for disagreement.
- Supporting facts and available legal authority included.
- Required penalties-of-perjury declaration copied from the current official instructions.
- Taxpayer or authorized representative signature included.
- Form 2848 attached when a representative will act under a power of attorney.
6. Assemble evidence safely
- Readable copies used instead of originals unless specifically required.
- Documents labeled by issue and tax year.
- Personal identifiers placed only on the official IRS package.
- Complete redacted working copy retained when practical.
- Document index or cover sheet prepared for a large record.
7. Submit to the correct office
- Destination copied from the appeal-rights letter.
- Request not sent directly to Appeals or IRS headquarters.
- Authorized delivery channel confirmed for the case.
- Mailing receipt, certified-mail record, fax confirmation, or upload receipt saved.
- Complete copy of everything submitted retained.
8. Prepare for the conference
- Preferred conference method considered: correspondence, phone, video, or in person.
- Short explanation prepared for each disputed issue.
- Settlement authority and representation arrangements discussed when applicable.
- Questions about new evidence prepared.
- All Appeals requests answered within the assigned timeframe.
9. Review payment and interest choices
- Potential interest exposure estimated with professional help when needed.
- Advance payment or section 6603 deposit considered using official IRS guidance.
- Payment versus deposit designation documented.
- Tax Court and refund-suit routes not confused.
- No court or refund deadline allowed to expire while payment choices are reviewed.
10. Follow the case
- Originating Examination office contacted if more than 120 days pass without an Appeals contact.
- Appeals assignment and official contact information confirmed before sending records directly to Appeals.
- Conference notes and proposed settlement computations reviewed carefully.
- Every closing letter checked for a new deadline or court right.
Official sources
- IRS — Preparing a Request for Appeals
- IRS Publication 3498 — The Examination Process
- IRS Publication 5 — Your Appeal Rights
- IRS Form 12203 — Request for Appeals Review
- IRS — Get the status of an appeal request